Source and Compiling Instructions on GitHub
Prebuilt Binaries for Windows and Mac OS X
Version 0.2 provides improved support for larger images and longer tracks by employing spatial decomposition and faster snake correspondence solver (David Rutkowski, 3/2022)
TSOAX (v0.2.0) for Windows.
TSOAX (v0.2.0) for Mac OS X.
Older versionsTSOAX (v0.1.8) for Windows.
TSOAX (v0.1.8) for Mac OS X.
TSOAX (v0.1.7) for Windows.
TSOAX (v0.1.7) for Mac OS X.
Examples of Image Data, Parameters and Results
We provide examples of time lapse movies and parameter files (with or without extracted snake tracks) from the data in the paper T. Xu, C. Langouras, M. Adeli Koudehi, B. Vos, N. Wang, G. H. Koenderink, D. Vavylonis, and X. Huang, "Automated Tracking of Biopolymer Growth and Network Deformation with TSOAX" (submitted).
Simulated 2D image of elongating actin filaments imaged by TIRFM (Fig. 3).
Elongating actin filaments imaged in 2D by TIRFM (Fig. 4) from Fujiwara et al. (2007).
3D image of dividing mid1Δ fission yeast cell expressing Rlc1-GFP (Fig. 5).
Simulated 3D image of network undergoing uniform shear (Fig. 7).