SOAX

Standalone Executables for Windows

SOAX (v3.7.0) is a standalone executable for Windows.

Batch SOAX (v3.7.0) is a command-line SOAX in batch mode that can be executed with options to set the image or directory names and to set different combinations of parameters.

Best SOACs (v3.7.0) is a command-line utility that generates candidate extractions from a large set of 3D extraction results (usually obtained by batch extraction using Batch SOAX).

Batch Length (v3.7.0) is a command-line utility that generates SOAC lengths from multiple SOAC files.

Batch Resample (v3.7.0) is a command-line utility that resamples TIFF images to have isotropic voxel size.

Older and 32-bit versions of Windows SOAX versions and its related applications are available in the archive.

Standalone Executables for Mac OS X (High Sierra)

SOAX (v3.7.0) as a Mac OS X Application.

Batch SOAX (v3.7.0) is a command-line SOAX in batch mode that can be executed with options to set the image or directory names and to set different combinations of parameters.

Best SOACs (v3.7.0) is a command-line utility that generates candidate extractions from a large set of 3D extraction results (usually obtained by batch extraction using Batch SOAX).

Batch Length (v3.7.0) is a command-line utility that generates SOAC lengths from multiple SOAC files.

Batch Resample (v3.7.0) is a command-line utility that resamples TIFF images to have isotropic voxel size.

Image Data for Validation

We provide a synthetic image of actin cable network and its ground truth centerlines. The ground truth can be loaded via Load JFilament Snakes in SOAX's File menu.